Basic Information | |
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Taxon OID | 3300010112 Open in IMG/M |
Scaffold ID | Ga0127458_1143325 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_2 metaT (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1722 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Angelo Coastal Reserve, California | |||||||
Coordinates | Lat. (o) | 39.7181 | Long. (o) | -123.6527 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F016640 | Metagenome / Metatranscriptome | 245 | Y |
F055478 | Metagenome / Metatranscriptome | 138 | Y |
F064480 | Metagenome / Metatranscriptome | 128 | Y |
F105847 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0127458_11433252 | F105847 | N/A | MATLDRALLMGHATIGPLAPREKEEFPMATYHTIRGQILARVPGIDLADIPSLLQMLVSTARGPEWRDLTQVRHALAGLETLWVEELADLREAIAAQQQDGLTRGLTAPETEAEVMAS* |
Ga0127458_11433253 | F016640 | AGAAGG | MTSLIIVVVVMACAGWMAWGRWTYWRTPIRPQPSAERSPQTRALEAFTHGNSCLAAGQLADATAAFEQARTLDPKRPYVAERLAEVVRRQHAASAPAPVAAGG* |
Ga0127458_11433254 | F055478 | AGGAGG | MHPSMTRWRMRGMDACTVEALARWQQKRDRWIGPRAPQTERTRRRPWVMQPHTAHPA* |
Ga0127458_11433255 | F064480 | AGGAG | MRSTTDHRSTTDHIHEGRDQTAPPPTDARGPEGTMYAPPETEASFEEIER* |
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