NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127484_1046621

Scaffold Ga0127484_1046621


Overview

Basic Information
Taxon OID3300010134 Open in IMG/M
Scaffold IDGa0127484_1046621 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_8_1 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2043
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008488Metagenome / Metatranscriptome332Y
F081169Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0127484_10466212F008488GGAGMALALLSVLSVTPSVADDADDAPVHFRARVLWIAGDTLMVATDDGQSVNVNLTRVPQDQYQRLRINDHVVVTGTIPTEQDRVEATSIEQLEP*
Ga0127484_10466213F081169AGGAGGMRHHRFATGLSAVALLVLVAGCAGPNAGLYESDTGAAGPAPASELSGAWHGTFGWVGANFYEDEARIILRIEEDGTFSATVTRNGGANNLAKATTWAGTAVTSGNRVTLRNSKGPWGWVTLVRSRNGNVLYGVASDPATKANVMLKIERDSRPEAP*
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