NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0127483_1198348

Scaffold Ga0127483_1198348


Overview

Basic Information
Taxon OID3300010142 Open in IMG/M
Scaffold IDGa0127483_1198348 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_1 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1099
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002331Metagenome / Metatranscriptome569Y
F026139Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0127483_11983481F026139GAGGMKRTALTLGLTLLATPAAAQWLGEPAWNDPTAGTGFTIYGDYSRPNSNAGGGTAFGGRVALGAGIFTLTGGVAS
Ga0127483_11983482F002331AGGMRAALTVALSAFLATPAAAQWLGEPVWNSPKGGTGLTISADYGKPNDAYGAGNAFGGRASLGVGTLTLTAGVSSYKSDSIGPDRVTTWGGNAAFRLIGGSLLPFSLNLQAGAARTSAIDLGRAQTYVTGAVGFSVPLPTPGISIEPYFSPGIRYRNFGPNNGTSTEFGYVFGANLSFGLLGAHVAYDNERLKGGGNIGVFGVGLHLDLHLPLGM*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.