NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126321_1107464

Scaffold Ga0126321_1107464


Overview

Basic Information
Taxon OID3300010145 Open in IMG/M
Scaffold IDGa0126321_1107464 Open in IMG/M
Source Dataset NameSoil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3519
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location NameKohala Peninsula, Hawa'ii
CoordinatesLat. (o)20.147Long. (o)-155.8342Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001929Metagenome / Metatranscriptome615Y
F011678Metagenome / Metatranscriptome288Y

Sequences

Protein IDFamilyRBSSequence
Ga0126321_11074643F011678AGGAGMPWHKVVIIHDDQARWSAAALMRPFIMGYHAHGSTPPAHAFVYHGLTDTGDHVYYFSPEASAIALATKAFQTFDVTQCTEKPHLDGCEKVTIS*
Ga0126321_11074645F001929GGAGGMEHKQDIETPIADDVLRDDAHTAPQMSFGWTFEPLPLAEAMRLVRASRMDAGEYAILREHLTRLAADTSASVRITPPPGVSYQKARNHCLKVAKTLAVAITVRRAPGGQIVCWKATAQEIALREKRSTALQRRRAQKTVEQTPSAPRGAKRKRASTQTTLV*
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