NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126321_1308197

Scaffold Ga0126321_1308197


Overview

Basic Information
Taxon OID3300010145 Open in IMG/M
Scaffold IDGa0126321_1308197 Open in IMG/M
Source Dataset NameSoil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)977
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location NameKohala Peninsula, Hawa'ii
CoordinatesLat. (o)20.147Long. (o)-155.8342Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000818Metagenome / Metatranscriptome878Y
F004649Metagenome / Metatranscriptome429Y
F020088Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0126321_13081971F000818AGGAGMQEIKKDGQSKRRFNIQRLEERIAPAITPVHINGGGNTPNGNANGVPVTNLNPAGH
Ga0126321_13081972F004649AGGAGMEDQKTNTQPKTRFNIQKLEERIAPSNANFPPGQFPSGNPAHAPGQSNPNEHPATNPSNDK*
Ga0126321_13081973F000818N/AMEQCMQDQKNGQPKTRFNIQKLEERIAPTILQVNGGGNVPNGNANGVPASNPAGHEPPGQNK*
Ga0126321_13081974F020088AGGAGGMDPRQVSRDAAQGRRFRIDRLEDRIAPAIVLVNPGGNTPQGNGANNGQAIEAQNPAGHAPPGQNP*
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Institute for Fundamental Biomedical Research
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