Scaffold Ga0126319_1162172

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126319_1162172

Scaffold Ga0126319_1162172

Overview

Basic Information
Taxon OID	3300010147 Open in IMG/M
Scaffold ID	Ga0126319_1162172 Open in IMG/M
Source Dataset Name	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	642
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location Name	Big Basin, California
Coordinates	Lat. (^o)	37.1932	Long. (^o)	-122.2204	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027266	Metagenome / Metatranscriptome	195	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126319_11621722	F027266	N/A	SPRVINDLSEITDAHIRAIRPPRNEKGWLDPTGWMGVYTARLIATAVQVV*

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