Basic Information | |
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Taxon OID | 3300010148 Open in IMG/M |
Scaffold ID | Ga0098043_1014054 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2622 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Subarctic Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.198 | Long. (o) | -77.499 | Alt. (m) | Depth (m) | 38 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008915 | Metagenome / Metatranscriptome | 326 | Y |
F026438 | Metagenome | 198 | N |
F046315 | Metagenome | 151 | Y |
F059875 | Metagenome | 133 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0098043_10140542 | F026438 | N/A | MANHINVIGESYKKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFSGGTLIHLIVQDSLTKGMKVAEVIKSEKIQNKINEYKPLDEKDEQKFKFIVKLAQETALNHLNNIAELGGQEWQDEQEQVLWTPPVKTYWLMYIDLVSKTLLGDLKNKFGNPTLTKTKGWTYSNVKCPDRPFYSDVQQVALYNKATGLKPFLSYASNCDRKLFTQENCEDLSPENLEKALKELMIYEIAWEKKLELADGDLNTLAWLCCPDFSDIKKKSFWWTGVAKEQIDRLLKHYD* |
Ga0098043_10140543 | F046315 | N/A | MNKKFMEYSVKSSYNSEFVESYMKKNDLLPKEFRFRRSALDLLLKQSNKKISDFVKDTYKPNEQKNKLAQISKILNPKPNAPKYFTENDLANDLAHWFNDFLQLDETVAPNFFVGDMVQIECIGTLFGNGQIGMHKKNERHKINIHPKYASFQAIECLVESKRGLMMLFKPTKSIDRNANNRTVICQDKKTKVHWFGFLEPNSNGKFDVIDKSQSTGKTIGKLAENIQISWSAEVKAAYYPTIYNT* |
Ga0098043_10140544 | F059875 | N/A | MKVFVLIFGVITNDGQIDLVKVPNSELKNINSCEKAIEKNLKWVDNPNFEQNSLPYGFYTYKNRVVMLQYCHLEGVESE* |
Ga0098043_10140545 | F008915 | AGGGGG | VNNEVTLDLYEMQSASHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLNIKFEYHANVGGVPDLIFKDLRLQVRTQLPKDNNKNSLIIRPKAKPGELYILIIDEAPKFKILGFVNSTFVLGQEQWKT |
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