Scaffold Ga0098043_1022606

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098043_1022606

Scaffold Ga0098043_1022606

Overview

Basic Information
Taxon OID	3300010148 Open in IMG/M
Scaffold ID	Ga0098043_1022606 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 9B_ETSP_OMZ_AT15188_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2009
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-14.198	Long. (^o)	-77.499	Alt. (m)		Depth (m)	38
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051146	Metagenome / Metatranscriptome	144	N
F062776	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098043_10226061	F051146	GGA	MTKDEFIYWTGWLKVRWPNAQLGEFTVKSLYKDFELFDDDVFGKVLLDYFDSGNEFLDWSKIKKRCKEYQTQVFSDKAQQIREQKSLKDKAIDPPSSLQSYLKMLGYKTFAEAVFYKTKDLYRYGGLRDWQRKLFEPYRKLSYDEAKTKGWRYGIGIEIDDRRK*
Ga0098043_10226066	F062776	AGGAG	MDKYSNPDVFIVFGGFVAIFLIGALLGEVAVLIAKMLGYEDVADKPNVDFMQRLQDGEVLDADNMFSNE*

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