Scaffold Ga0098049_1235568

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098049_1235568

Scaffold Ga0098049_1235568

Overview

Basic Information
Taxon OID	3300010149 Open in IMG/M
Scaffold ID	Ga0098049_1235568 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	557
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.198	Alt. (m)		Depth (m)	48
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008748	Metagenome / Metatranscriptome	328	Y
F043385	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098049_12355681	F043385	N/A	MIIRKVGGLWIVQKSYDQQIVFSHKNRMTCYEWIFKSVNY
Ga0098049_12355682	F008748	N/A	MNREELKRLWFSLPKTKPVKEIKAVIVEKHGDNHYSCERKTQTDTYWSSSSANFNTFEQALERANSILSDDYYEGYELIVK*

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