NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098056_1077557

Scaffold Ga0098056_1077557


Overview

Basic Information
Taxon OID3300010150 Open in IMG/M
Scaffold IDGa0098056_1077557 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1138
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029745Metagenome187Y
F073529Metagenome120Y
F077179Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0098056_10775572F029745GAGGVARKAPQVGDVVKSRVTTESLAGYIVAKEGIHVWVRFFDTEFEAGDSWDVYTRRDTLEVLSRANAS*
Ga0098056_10775573F077179N/AMEVRTVKQDDYKPGDLILFFSGNSRFEEGPEEIGWIVRRDHDDPSEPAVMVAFPEPNKNGLLHYYDVELREWEKAGTIEVKRG*
Ga0098056_10775574F073529GGAGVKIGDVVILRTGRYNFSATAKAKWAWTDVLGVITDDRGFVDGTAEYKVYTVDNKHSWEHVDDLRIPD*
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