NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098061_1064388

Scaffold Ga0098061_1064388


Overview

Basic Information
Taxon OID3300010151 Open in IMG/M
Scaffold IDGa0098061_1064388 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1405
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-15.59Long. (o)-75.37Alt. (m)Depth (m)65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016323Metagenome248Y
F023448Metagenome / Metatranscriptome210Y
F023958Metagenome208Y
F069347Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0098061_10643881F023958N/ARQMMYAQFSDIITAYEMLVTAKSSGLDMWEAIIMILFILKDIVIVGGILGTIIWYIKGKK
Ga0098061_10643882F023448GGAMSYSHDNVIDKLLKLNERIAVDLTHDIEKDLIWCQRLLTDVKDSGLVPNKEEFTMANLLWKKYNNSVEPTNENMWELIDSMLTQENPTKIGAIKMYRRFTNSTLREAKEMVDAREIKIKRNW*
Ga0098061_10643883F069347N/AMRPTKRTKARKVKGSPALDKLMKLKYRINDAYKAGRSHFISSSAEMSDKTWVMEEITNLRQGGWLSATKMKVANEMWSKYGN*
Ga0098061_10643884F016323GGAGMATKLIDVLDEMNWKESTTNKMVVEKLDKLARLIYGVSEYNEDADFVSTIMEDLIQSPHKRITRLEIEKCNNLYKQYKELK*
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