NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098061_1087583

Scaffold Ga0098061_1087583


Overview

Basic Information
Taxon OID3300010151 Open in IMG/M
Scaffold IDGa0098061_1087583 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1169
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-15.59Long. (o)-75.37Alt. (m)Depth (m)65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061351Metagenome132Y
F091010Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0098061_10875831F091010AGGAMMSRLNIKTATLNELENECAELVGTQFGHNMIGIICGIVEDRFGEEEADRLFETYQG*
Ga0098061_10875832F061351AGGAGMNSYDIEKIVRWAVDSDLQQFSEDAYGITGSAFDRMNQGDDYLSGKFQQMQANFIMWIAGLSENNRKRLADNITKEK*

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