NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098061_1115471

Scaffold Ga0098061_1115471


Overview

Basic Information
Taxon OID3300010151 Open in IMG/M
Scaffold IDGa0098061_1115471 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)992
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-15.59Long. (o)-75.37Alt. (m)Depth (m)65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018077Metagenome237Y
F075977Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0098061_11154711F018077AGGAGGMTVKSLVSQIEKVFGRQSEAYLKEIINEGLLDISNKKQHYTVSSTSDLETDKRWYELPTSVLSIERVEILDTNDRYVMIPKL
Ga0098061_11154712F075977AGGAMANFDAQITELVGGTIDQTACDQWAADACKEILNILPTKFREKASTVSELDNSPTTMDLDGVGDILFVTRENADDGYQVPCRLIPSQYGGLATDSTDLNYFGTVTDPVYWIASNTSDAVTLFVKPDPTANQKCYVHHITYPSVNVSDVDAIPNFPDEAEYLVVLYCSSKQAAQFMTTEADNEDSELYQLYSDMYAKFNAEYQNGLSFLKGGTK*
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