NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126318_10537901

Scaffold Ga0126318_10537901


Overview

Basic Information
Taxon OID3300010152 Open in IMG/M
Scaffold IDGa0126318_10537901 Open in IMG/M
Source Dataset NameSoil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1137
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location NameSouthern Great Plains ARM Site, Oklahoma
CoordinatesLat. (o)36.605Long. (o)-97.485Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019700Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0126318_105379011F019700AGCAGMEGALRASEPHLASMYAIFGRLNADEPIGMERLARKRLGWLQHGTVMYAIVLLPVMFAAIIVGALLGGGTRSNAAACEASYSIGGVSPLSSRPS
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