NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127503_10153945

Scaffold Ga0127503_10153945


Overview

Basic Information
Taxon OID3300010154 Open in IMG/M
Scaffold IDGa0127503_10153945 Open in IMG/M
Source Dataset NameSoil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1153
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location NameUSA: Willow Creek, Wisconsin
CoordinatesLat. (o)45.8056Long. (o)-90.0794Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012935Metagenome / Metatranscriptome276Y
F052743Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0127503_101539451F012935N/ADELDDLAADLEARLEGSGPVDSPGAEGLAQPDRFFLVAGMHRWHELLAEGDYGRPSETSARLVWLADKGPDAGIHVVAWTDGYATAERALRRAGLGFFGLRAVLRVLSPAESDALLGVSAAASLDDDRALYRDTEWPVEQVEKFKPYSTASLYAFAREGFLSTNGKRSPA*
Ga0127503_101539452F052743GGAGMTIEPATATSQSATATSPYLSLRQAVRPAILAHRLLAGDQERAGTLAAECEDLLDLTRELLKATGRARILAVVPAPRMPDESGGDRQAQLCEAYADAGLLWAKVVGSSLALAGALIERGEWEDVRALAGFLAGAGEESAATELRIRLGGAVWEAHREQLRAISNDMPPAAIELAINALRAVLREVPE*
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