NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098047_10025273

Scaffold Ga0098047_10025273


Overview

Basic Information
Taxon OID3300010155 Open in IMG/M
Scaffold IDGa0098047_10025273 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2376
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.201Alt. (m)Depth (m)170
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071131Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0098047_100252738F071131GGAGGMKPGDLVRLRKSHPAVQRWRKQRWLAIGQWAEAGTPLLFIGECDYSVGRCKVLGPDGSLASFDDYLLTTRGLK*

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