NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126306_10024841

Scaffold Ga0126306_10024841


Overview

Basic Information
Taxon OID3300010166 Open in IMG/M
Scaffold IDGa0126306_10024841 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3996
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8692Long. (o)-122.4282Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015744Metagenome252Y
F036418Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0126306_100248413F036418GAGGMHNFASLERSKLEKLTELQSRTIDGLGMLLATPAPPEAKVAEADELVRHYRELKDTLIGPASTSRDASD*
Ga0126306_100248414F015744GGAMLLALLASSMLRAQSTDTETGLTHTLAAIASTPLGALTPVGPVMPTSRDDALLFGFRLQYGSRALDQGRSLTSYGLVTNLQFEGGPLISGTVGYQRGDEDICTQSSCDPHRVMAGLRYSTYLVTTRPFLRVPFFTENDATGTATLEFGAGWADAGFGENRHWTADITVPLSLAVGQSIRIVPFATPTFALAWGTTEREWSRGQRFLVGGGVTVQEIGRLVGMTGLDVTAALQRAFSPHGTTLGVTVSWMRVP*
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