NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123353_10069842

Scaffold Ga0123353_10069842


Overview

Basic Information
Taxon OID3300010167 Open in IMG/M
Scaffold IDGa0123353_10069842 Open in IMG/M
Source Dataset NameLabiotermes labralis P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5642
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000003Metagenome14941Y

Sequences

Protein IDFamilyRBSSequence
Ga0123353_100698421F000003N/AMLYREIMAVCSVIHIKHINTLCGQNQELLNVNLAVYKY*
Ga0123353_100698422F000003N/AMLCREIIAVCSQIHTKHINTLCAQNVELFNVKLVVHIVTTGLQRVKSLL*
Ga0123353_100698423F000003N/AMLYREIIAVCSEIHTKHINTLCGQNVELLNVKLAVHIVTTGLQRV*
Ga0123353_100698424F000003N/AMLFREIIAVCSQIHTKHINTLCAQNVELFNVKLAVHIVTTGLQRVKSLL*
Ga0123353_100698426F000003N/AMSYREIIAVCSQIHTKHINTLCGQNVELLNVKLAVYIVTTGLQMVKSLL*
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