NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124921_1274727

Scaffold Ga0124921_1274727


Overview

Basic Information
Taxon OID3300010194 Open in IMG/M
Scaffold IDGa0124921_1274727 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0900_T MetaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1189
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036249Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0124921_12747272F036249GGAMTFNPNTSHYASAVGAWLDSNFRDQFTVTTAFLEKLKQRGAFKRGAAYLVQPLFSSGNNTVAGVSNFNSPMSIPADTGLSAVYTWSWYQGLTTVNAQEAAAINTEYEMVDLLEERLRSTVAQFGQVLSNHLFTDTDATLGKIAGLPYAVDSPTTTANSYGGISRSNTQNPWWRAVVINASNQPLTLQRLAQAYNLATENGGISPDIIVMPTAHFSAFESLLLATQQYRQDDEIARAGFMGYLFKGATVLFDPRVPINTIFILNSRDIMLVSQTERPSAEPVEFPDRLVRGYKHGWAVALVAKRLN
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