NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0124911_1216699

Scaffold Ga0124911_1216699


Overview

Basic Information
Taxon OID3300010195 Open in IMG/M
Scaffold IDGa0124911_1216699 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500_T MetaT (Metagenome Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1513
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049663Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0124911_12166991F049663N/AATTRGFPNYGVVLQLASLLANVSSFSGFLTIEKTIEQPNFVLHFMDLIGTNVRDRNQPSPVFPTVGPTRYDNSAYGLQTYTTPSTVTPLVINNTTFSTAAGLLANAAIPPIMPYTIKIVVKAYTGGSLVATEVFTDNGNGMLVSLGVSSGTITIDPATPIPHIARYGNPSLPPQSTGWDFTINSIQINGPTGSQLVAELSFAFNYTEPIYYPGQEQDERFTLNLTRVVAVNTKPAKLTIELNKQELAAISKSLSQDLQPVIVQRIGEIYNKMVNRYIVRKYMQRFVTDTVNYSDFVIIDVGSPIGGPGGATTPDSTYNQYIPILDRMRGGFEKVRQELHRKSFIANKPTALLCSPKLAYFLARSIMVEQSLWVEEKVTYINDLFGYYIGIPVLIHTELEALDTAFDAWARGTGRPMANSSLDFVTAAVGFAVAILPDNNLAPMVRATFLPPTNTPTVANFNNPLQEAFSMFYQEEVDVVAPELVVPFAVTNMPVS*
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