NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127508_1280222

Scaffold Ga0127508_1280222


Overview

Basic Information
Taxon OID3300010199 Open in IMG/M
Scaffold IDGa0127508_1280222 Open in IMG/M
Source Dataset NamePeat moss associated microbial communities from Sphagnum species from Minnesota, USA - S1T2_Fd - Sphagnum fallax MT (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)680
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated → Host-Associated Microbial Communities From Peat Moss Sphagnum Species From Minnesota, Usa

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003347Metagenome / Metatranscriptome492Y

Sequences

Protein IDFamilyRBSSequence
Ga0127508_12802221F003347N/ASNTWDFSAMADEYIEETFTLDIPAPQSVPQPQRYQAPQSYSTYNDTSNAFGDGGISEEDRLNKHIMKHQVGGRGQAMLESNALYEEPAPQPVRRPAGVAEHWADLHREFADVLDINELQKYRRHFRAFGEKDGFIDANSLHETMEAFFGQDLERRQILETISEIDYDNDGRISYREFLEVMCALKSGDRNRKTKFGNFYKVLTLKNPPFWSGRVGRINN*
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