Scaffold Ga0124912

Basic Information
Taxon OID	3300010272 Open in IMG/M
Scaffold ID	Ga0124912_1102717 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_T MetaT (Metagenome Metatranscriptome) (version 2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_T MetaT (Metagenome Metatranscriptome) (version 2)

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2281
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

2281

Total Scaffold Genes

2 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	USA: Wyoming: Yellowstone National Park
Coordinates	Lat. (^o)	44.539	Long. (^o)	-110.798	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming: Yellowstone National Park

Coordinates

Lat. (^o)

44.539

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F011398	Metagenome / Metatranscriptome	291	N
F054899	Metagenome / Metatranscriptome	139	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0124912_11027171	F054899	GGAGG	MKVLRSLFASICAVALTTASVYAQKNDLNWAVYNPPNPKVVYTWLDLDRSFPYSNANAILDADILLRLPTLYRRDYKPLPSGTRLPIHIAPDVQDLSKARWKVWRFGQFVADGIEVPTIEPWLKSRTRQLRAVTYRPLPKLHSGDPIPHRVDGLRYGEMRIPVLNYSPDMIAGYPCPPEGEPREAAGELPRVWLELSDPRSTGAALVPDDPCVTQRAIDLAVYALSHASPDQSMSEFMNGLRTIRDRSVSGIYGYSDTDAIYRMYYLEKDTIAWFGRDAPLHGGLMYFMPNPQNKRLYWLLVHPPGDPRLHPVSHPFDAYVRAAESGTATSGSPYWRVQHLTTKGKRLVGPWIGRIGVRFVLYSPDEALVCGRSVPHGEIAFGRRIEGNRREIAARKEIDEFFAAHCEFAVGPHTRLGTSHLTSAVVYLVWDFEHNAWTFDEIAVGSAEWGMTAGIDRAFYPAASGDEAISRLMPASLVYRLLPSFVAIGR*
Ga0124912_11027172	F011398	N/A	DYAGDRVVGVNTDARGEVTECALIERAVLERPATIWRMTPSYDAFLYQSKHKRENLFRLSTDGDGTWVVFEPERLRPLYGQYTSLSAADLPGEQTWSFRFTYDTSIPDFLSSQACRNNPDVRRGYPESLAKLLGDDFPGTVRIAKTYALLGNEYLTFAIVSSQPLDEVARLVTDRLGKTLNASLSPASVQIYGQRATRISLSRFLYQLNVEAIALDSQLTLVRGREVRFGGQSR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0124912_1102717

Overview

Ecosystem & Geography

Associated Families

Sequences