Scaffold Ga0116210

Basic Information
Taxon OID	3300010288 Open in IMG/M
Scaffold ID	Ga0116210_1002134 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Tshipise hot spring metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring microbial communities from South Africa to study Microbial Dark Matter (Phase II) - Tshipise hot spring metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12700
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (21.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

12700

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (21.43%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	South Africa: Tshipise
Coordinates	Lat. (^o)	-22.6092	Long. (^o)	30.1749	Alt. (m)	Depth (m)	2 to 3
Location on Map

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Source Dataset Sampling Location

Location Name

South Africa: Tshipise

Coordinates

Lat. (^o)

-22.6092

Long. (^o)

30.1749

Alt. (m)

Depth (m)

2 to 3

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F049663	Metagenome / Metatranscriptome	146	N
F062520	Metagenome / Metatranscriptome	130	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0116210_100213412	F049663	N/A	MRAKLLIEKALKQKAFVGALMRSSLENREYASYRLSEYVKAYSNQDAYEKSSLERMFSALPGTATTRGFPNYGVVLQLASLLANVSSFSGFLTIEKTIEQPNFVLHFLDLIGTNVRDNGRTEPVFPTVGPTKYDNSAYGLQTYTTTPTSTPLVINNNTFKIAANIDVTVPIPPIMPHTIKIVVKAYNSSGNLLATEVFTDNGNKMLVSLGVSSGLIGIDTSVPVPHIVTYGNPSIPPQTTIGSGWDFIINNIQINGPVGTNLVAELSFAFNYTEPIYYPGQEQDERFTLNLTRVVTVNTKPAKLTIELNKQELAAISKSMSQDLQPVIVQRVGDIYNKMVNRYIVRKYMQRFIDSNNFSGVVTIDIGSPFGGPANPGSPLPPYSSYDQYIPILERTRGGFEKVRQELHRKSYIANKPTALLVSPKLAYFLSKSIMVEQSLWVEEKVTYINDLFGYYIGIPVLVHTELETLDTAFETWARTQNLIPSPGIYATAAVGFAVAVLPDNNLAPMVRATFLPPTNTPTVANFNNPLQEAFSMFYQEDVDVVAPELVVPFALVNMPVS*
Ga0116210_10021349	F062520	N/A	MANRRFVAVVAAVPNLKVDELKRLPTFVDERNIPDMGGNLKTWRWTNNPEVYEIYYNEAGILRYHYFTDRISNDSIKNLIDFVRNNKIDAQVPNNAFINASYVFSTTVEQSPELYSAIIAPAMFLEADNVGLARGMTSYGFKIANQTYDLVLKAMWESVVIHVELSVVYNTQSVVGLDTVLPHMLEVLSNEHRILSSRIFTADKAVAR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116210_1002134

Overview

Ecosystem & Geography

Associated Families

Sequences