Scaffold Ga0129345

Basic Information
Taxon OID	3300010297 Open in IMG/M
Scaffold ID	Ga0129345_1011467 Open in IMG/M
Source Dataset Name	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010297 Open in IMG/M

Scaffold ID

Ga0129345_1011467 Open in IMG/M

Source Dataset Name

Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3453
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (45.45%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3453

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (45.45%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	37.1849	Long. (^o)	-76.1104	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

37.1849

Long. (^o)

-76.1104

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020913	Metagenome / Metatranscriptome	221	N
F021778	Metagenome / Metatranscriptome	217	N
F023859	Metagenome / Metatranscriptome	208	N
F025038	Metagenome / Metatranscriptome	203	N
F048992	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129345_101146710	F021778	GGAGG	MALPKFLEDYTTVGELISKMNNEYPECRLVAEMVDNGEDWVIFKSSFYENKEDTEPKATGYARQTKADHNSWFEMASTKANGRCLRVVFSESTTAEEMIGIAPSKEATPQKSIEKELDKAGIEYEDVSVSKTHVINNIKSFAMDVSSENKTNAANWYAQALGELGINETQLDINNMQTVKNKIQDIATELQVGGA*
Ga0129345_10114675	F048992	AGGGGG	MEYAADDINYGYMSILMQINSEYTLIDKIQNIREIDGSIEHPIFGTNKGGVTFTLFLRGFYTVFEAVMNFGNRFDIYVVNESGNTTMIDEDLDQLISLLHILYINKKAEEDELLNRALNPHTYRKVAKKMFYNEDPPF*
Ga0129345_10114676	F025038	N/A	MPEVNKNNRRFFVEDEYDLYDVRKARPFWNDVCEVNGWQIIKDEEDFKEDYVCKINNELYFMELQVVAYWHNFDLSKISNVRISASKINLLREKDNGGLIFLNCVPNRFFAINVNQVTPEMKKDSVREQFYEIPLKTINPREVNVLDTNYCDCLENHLPIMKRSGGRMAFGQKDYNIRGANGICC*
Ga0129345_10114678	F023859	AGGA	MKKVIVKFIGVKKYLVTDNADPQKIKDMFRKDLELLPPVWANNIEAVMYAKDVPEEEEE*
Ga0129345_10114679	F020913	AGGTGG	MLGLFGRNKPLSILEDIQLQKEPSEFRKIQYVLELEGFICSLDPEFNKNGNLRKAVNRLRTQYNALIYTEVCNCDNKQYAKLKKNGSPFMHKAYIKDWAL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0129345_1011467

Overview

Ecosystem & Geography

Associated Families

Sequences