Basic Information | |
---|---|
Taxon OID | 3300010299 Open in IMG/M |
Scaffold ID | Ga0129342_1021352 Open in IMG/M |
Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2643 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 37.5161 | Long. (o) | -76.1223 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F016522 | Metagenome | 246 | N |
F095405 | Metagenome | 105 | N |
F099216 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0129342_10213522 | F095405 | GGAGG | MGGNCQGMGFPVCPQCRCGLLESADTEIAEWGTVVHCEECGCGSMVYVEPDGSYSSYCFAGHNWHMLNGCKVCSLCGAEDEGGL* |
Ga0129342_10213524 | F099216 | AGG | MEVGQSVEVPNATVKQGQRGTSWARRKASSCRRFSVTESGSGVIIERLPDRELVGDAIRNGKEKIFVRQSVEAARQAIRRAIRAGELSGFWHVEPSGSGSMLQQMATQEDVDAAAAEYRRWRNARR* |
Ga0129342_10213525 | F016522 | GGA | MVHMVYKLDAVGRRRWLVGQLTAGDMAEEITRKPISRHGWSPRQGDAQRFGSEPEARAAADAVDHAVRSLGLCQVMEVI* |
⦗Top⦘ |