NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134070_10014421

Scaffold Ga0134070_10014421


Overview

Basic Information
Taxon OID3300010301 Open in IMG/M
Scaffold IDGa0134070_10014421 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2524
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002770Metagenome / Metatranscriptome531Y
F003044Metagenome511Y
F004064Metagenome455Y

Sequences

Protein IDFamilyRBSSequence
Ga0134070_100144213F003044GGAGVEFRTGNLCSKCQQPIVSGEGFDFVCFKVPGREGYYFFHCRFRGGDCWEAYMSESRRK*
Ga0134070_100144214F002770GAGGMNIIRILLLRAFVLVILISSFVYLTYGKEGPSVVHIMRNVAWNDFITQIKFLPDDSPQESLDKEMVVIQRFLKAHETETRVDIYDLEVFKAIDRARARLQKADKDLETLGNELSYKEQQARLGR*
Ga0134070_100144215F004064N/AMRGAFVVQLGPETRPAEGRFEGWVEEVDSCTELRFRSSEELLKFVGQRFDLARASVDKTWACNKSEQVSPRKKTSRKERGSR*
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