NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134070_10142414

Scaffold Ga0134070_10142414


Overview

Basic Information
Taxon OID3300010301 Open in IMG/M
Scaffold IDGa0134070_10142414 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)856
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007852Metagenome / Metatranscriptome343Y
F013072Metagenome / Metatranscriptome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0134070_101424141F007852GGAGMKPSAICRLLSAVLLIGAAPAAAQTSLSIYRDGRVVVRRTLPQALQQGRNALTLRLEALDPATLFSPDTAVSVTSATVRYPSTSSDALAQAVGQTISFVRAKGDTIRATVVRPDPPQFRLSDGRLLLSPPGEPLFPAELVRTSPEAQVTLDASRARPRTEIGYVAKGMTWETLYQVVLTGTKAQVSGTATVISQNFRTDSADVQLVAGS
Ga0134070_101424142F013072N/AGIAIGGLCPSCTRLLERRASKIGRLVAIGTTVPLAVYVALSLPVERTARVVGAASVLLWYVLTFLIAKRVTLEFLK*
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