NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116202_10002226

Scaffold Ga0116202_10002226


Overview

Basic Information
Taxon OID3300010302 Open in IMG/M
Scaffold IDGa0116202_10002226 Open in IMG/M
Source Dataset NameAnoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 325m metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11537
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Lake Kivu
CoordinatesLat. (o)-2.0288Long. (o)29.1756Alt. (m)Depth (m)325
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040986Metagenome160Y
F047432Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0116202_1000222613F047432AGGMSGAIKRTCEMVSELRAQGRPWLEIQDELEKAGIKQGDYRPLYFGCETAPYRLRFIPKREPRILSREFDEELARLAREHSLVVQMRCTGYNLFVDTGKPEGVRQGIKKVLRLRHRTEWLQALWVDKYCIEVDRPDLPGVPEALEDIGGRLYGMAAR*
Ga0116202_100022262F040986N/AMDSKIFKCPNGHEETSSPRTFLQILETSESQPMQDWKPTEGRNYINILDYDTARINGMQIDHIGSGLYVDRKTGKKYDYEEDMKGNRHYFEVVA*
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