Basic Information | |
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Taxon OID | 3300010302 Open in IMG/M |
Scaffold ID | Ga0116202_10002226 Open in IMG/M |
Source Dataset Name | Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 325m metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11537 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (57.14%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Rwanda: Lake Kivu | |||||||
Coordinates | Lat. (o) | -2.0288 | Long. (o) | 29.1756 | Alt. (m) | Depth (m) | 325 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F040986 | Metagenome | 160 | Y |
F047432 | Metagenome / Metatranscriptome | 149 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0116202_1000222613 | F047432 | AGG | MSGAIKRTCEMVSELRAQGRPWLEIQDELEKAGIKQGDYRPLYFGCETAPYRLRFIPKREPRILSREFDEELARLAREHSLVVQMRCTGYNLFVDTGKPEGVRQGIKKVLRLRHRTEWLQALWVDKYCIEVDRPDLPGVPEALEDIGGRLYGMAAR* |
Ga0116202_100022262 | F040986 | N/A | MDSKIFKCPNGHEETSSPRTFLQILETSESQPMQDWKPTEGRNYINILDYDTARINGMQIDHIGSGLYVDRKTGKKYDYEEDMKGNRHYFEVVA* |
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