NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134082_10000775

Scaffold Ga0134082_10000775


Overview

Basic Information
Taxon OID3300010303 Open in IMG/M
Scaffold IDGa0134082_10000775 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11092
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053962Metagenome / Metatranscriptome140Y
F067512Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0134082_100007757F067512GGAVRDDLNTMGKQGHTILRARDKVLEILQAENACSAWYRTKDSDPAASFRTLTFALDREGEVYIRKFPESGGVELIRNPYVARVLQGAGPNSTVTINPHGAFFLPVATVLRGVLDGGPVEFSGARAIQVGPYAGGSFRAQVLALLHEFGHVIDLLPQDQDDYEGRSRQNTLDVLHVCRVEVESKELPRTFLASR*
Ga0134082_100007758F053962N/AVREKGTTLKWNVMLQNRLLRNVLLGGLGLLAGFLALAVAVALEPQVPMPLLVLLSPGLKIAELIMPDTHGSLAWTFGWFLRIAIIGNAAFYYGIFALFAHLLPRRHTG*
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