NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134088_10008967

Scaffold Ga0134088_10008967


Overview

Basic Information
Taxon OID3300010304 Open in IMG/M
Scaffold IDGa0134088_10008967 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4244
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025253Metagenome202Y
F031042Metagenome / Metatranscriptome183Y
F040564Metagenome161N

Sequences

Protein IDFamilyRBSSequence
Ga0134088_100089672F025253N/AVRAALLLSLALLVIPGAAGAAGPTDIARVDDYIDAPRALFGRTRTELERRLGVPTQERLRAGTIVLFWPGLEVAMSPSARVAAISVRAAGRPLPDGLDVGAPRARVEAVLGQAQDTTDERAFYLDADGFPNSVEFFFRDGRVTRIEWRFWAD*
Ga0134088_100089673F040564GGAGMATLTALCRDDATVVLCSRLRNLGFAVSWLYMDELRHGRIEPEALAGSDPPDLILYDLDAPVDASLLLLTRFRSLPGMGGVPVVLLRTAQTPLPPLDGPGIVAVLTRPCEPALARTIIAAALRDGLDEAA*
Ga0134088_100089674F031042N/AMVVVLFAAACTTGTPLPQPPPPGAGATMSDIRGSWRGTWGGAPAALLITDQQVSAGYSGLYVGNYQLLGHERPGVAGILTSEINTEQTSVPAHGWFGGVEGQLTLRIVADSPSGQQRLTLRPDGPDRLVGMGDSSFRWGPSGPIELTRER*
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