NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136655_1001608

Scaffold Ga0136655_1001608


Overview

Basic Information
Taxon OID3300010316 Open in IMG/M
Scaffold IDGa0136655_1001608 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10077
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.0754Long. (o)-76.1533Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052433Metagenome142Y
F059124Metagenome134Y
F072426Metagenome121Y
F073751Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0136655_100160811F073751AGGMVQNNIKWNLTSEKCFEIIHLTLIDILSESKEGIRNINELIVMLNKRTKVYKLHNSRKYNSFSKYLKIEYNGFLNFIENYNFYGVIKNDKNISIKLYKNLVNLDDLKYTGKRLTKDSEWVFIDDELL*
Ga0136655_100160813F052433N/AMDSSKYYPYNIPFYTDVKFIDVKFINNEDHLINIFFVKGDILGELAGIIFPHSERKYQFPENSIVAIISDKNPNKYHCFIKLIDGMTYIYP*
Ga0136655_10016088F072426N/AMNTKPKLVDPNWFVKPKSIVKKIIPTNADNSLIINIIGLCILVIGGLCIYQRYLDREKTELETQNKIIELNEYVKRNIK*
Ga0136655_10016089F059124N/AMNFDSNLVMAIIIYLGSCYALYNYKHSKMFDKSGNFKTFGLSKDETVFPYWLVTTLIGLSSYYFLIIRIDNLI*
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