NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136656_1038136

Scaffold Ga0136656_1038136


Overview

Basic Information
Taxon OID3300010318 Open in IMG/M
Scaffold IDGa0136656_1038136 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1740
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.5161Long. (o)-76.1223Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F016772Metagenome / Metatranscriptome244Y
F091423Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0136656_10381363F009669N/AMKNMLFKLFGPNWRSSTSGIVTVVAVSTAFVIHGDNSIVAFLPDKLEEYIIGFAKLIAVVSGVVFALTVKDAAVTGGTIPQTIEAKKRSCSEKIKNPANKAGRRNI*
Ga0136656_10381364F016772AGGAGMNKLSIGAVALMSLFMVGCSTTNTGGDNQIGGTTGVENALPYIKPAVILACTVVLEQALSPEDRIEKAKMINHVATVVESLTVGQTPTPDQLQKALTDYLPAEKTHWAKYVVAVKDIYAAQFAKLNGDAALAVKVLNAIAAGCKDATAEYVE*
Ga0136656_10381365F091423AGCAGVTELLGAVVRLVGGIFEAINNVFGAKNTKEMKDRQQAQKEVDHQSKIEKAVQEKDLEK
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