Basic Information | |
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Taxon OID | 3300010324 Open in IMG/M |
Scaffold ID | Ga0129297_10041167 Open in IMG/M |
Source Dataset Name | Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I18A1 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2234 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Indonesia: Gulf of Boni | |||||||
Coordinates | Lat. (o) | -2.75 | Long. (o) | 121.05 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F039458 | Metagenome | 163 | Y |
F093178 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0129297_100411672 | F039458 | N/A | VKKTAEKQIKALFAEHAIPPMEVIIPILEKTGRGEQELTAQIYNTYSSLIKGLKEILGLKDKNMKTVAKVWEAVLGFEGSKFEPIELTESRFSFSIPDCPMLHVGKEVSLNVKSKFCDLICTAGSRALMDSVLSPHKGNCTWNKALIKGAGKCTVVFELVKAT* |
Ga0129297_100411673 | F093178 | AGG | MSFFKNSSLLISILLVCVGLAFILIWLGIAKSISYADMKTILTTTTATFGTLLGIITAGLMFTQGKFSELTSELTEKSPNYLAKVLSLEKIQSIETHLLALKKAFTQLIASTTIAEERDLYERIVTKASSMFVDFAVLLNLKLTQHGLVDTGLLVSEMDSSLYKVYQKRRQNINKEWQIFSVIKRIIDTWEAPATLFIEKSNREPPLQADLKSSTAILKLKENVGESSTNIRTEVVKTLSELNGELTKISKQFHEDRIPQLLPQMKQASTIRGKYFYLALVFIATPLLINLLILPQLSETTTTFFQPIISITSLLSVFGVIFLLLYIHKILSV* |
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