Scaffold Ga0129297_10382227

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0129297_10382227

Scaffold Ga0129297_10382227

Overview

Basic Information
Taxon OID	3300010324 Open in IMG/M
Scaffold ID	Ga0129297_10382227 Open in IMG/M
Source Dataset Name	Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I18A1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	629
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Indonesia: Gulf of Boni
Coordinates	Lat. (^o)	-2.75	Long. (^o)	121.05	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F104376	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129297_103822272	F104376	AGGAGG	MPLAWDKKLQVAPGQETSVVTYQVGAGKLVSLDGFIAFGTCAGIYRLYVDSEVKASYMTSEADRNAYVVFRTEHVSGPKTITIKVTHFVPAIAGEGQDFEGTILGG*

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