NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134111_10092425

Scaffold Ga0134111_10092425


Overview

Basic Information
Taxon OID3300010329 Open in IMG/M
Scaffold IDGa0134111_10092425 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1153
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002381Metagenome / Metatranscriptome566Y
F040038Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0134111_100924251F002381GAGGMRGLTLLTATILTFGYGFAAQAAMTVDRAETYRRVAGTVETAAPAPAADAQRVWYGGMLAPITVEVTAEPK
Ga0134111_100924252F040038GAGGVRLVLAALLLPAIAGAQGVELSGVVTLAHGDHRVDVGLGVERATGLLTGGAARLRFRSIAVALSGEPGHLTAVPGSGGVDRDVAQVGATALFTPLPWLVLESGVTLRSFGTVVARQRWTLLRAGAQARVPLSGETLWVLGHAHLLPVVRVNGLPAAATAFDAGTGLAYQGGRIVFALTYTLERCDFPSQGSTRRSEQLGTLALSGGVQLHLH*
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