NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136651_10038653

Scaffold Ga0136651_10038653


Overview

Basic Information
Taxon OID3300010330 Open in IMG/M
Scaffold IDGa0136651_10038653 Open in IMG/M
Source Dataset NameMarine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4569-2 3-6 cm metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2596
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008424Metagenome / Metatranscriptome333Y
F015742Metagenome / Metatranscriptome252Y
F016667Metagenome / Metatranscriptome245Y
F030400Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0136651_1003865310F008424N/AMEKKINILERLLYLTLIAGICFFTGVFYTYYKIDQRLWNEDILKARDIETRYLNYPTKRNYKRDDLERIIYGKER*
Ga0136651_1003865312F015742GAGMDSKKAYEQLKEEIVDRESAYLCTELERALDRIINYTDPLDETMFRDIKASAIKLLKEWHL*
Ga0136651_100386536F030400AGTAGMKELCEYVSQKKKARKLQHLEMIRIYGECKGMGDKNYKLPQKSSFPKQYKAAYNKIWK*
Ga0136651_100386538F016667N/AMKINKNLKRVLVTLALITVGFTAGKQQGEQTIIDRWENRWFDSDWYDKQSIEDILLDTDYSIELGE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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