NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116200_10018510

Scaffold Ga0116200_10018510


Overview

Basic Information
Taxon OID3300010332 Open in IMG/M
Scaffold IDGa0116200_10018510 Open in IMG/M
Source Dataset NameMarine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3473
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F011723Metagenome287Y
F028993Metagenome189N

Sequences

Protein IDFamilyRBSSequence
Ga0116200_100185102F009582N/AMREQRRRRGFVSGTGRAVKEARVDVILQRVNEKIGSELNVSPSRIFRYGVNNIFQRSFAYLLGWKTNGEPQKVAVTEGGLLKVGISGAGFEEIDVLQGTATVEWSDVLEFSFIPNRIRFESLDYPYCVKFSKDNVTWSEAVYVDEDTPRDYDICARYIKVKKYGGTDAQYWIVGMR*
Ga0116200_100185103F011723AGGAGGMVIYNKGLSRDNSTNDGKTIFTLTSKEEEKYKVRRIVITDVVTNSLVMEVWIERDRIGENIPLEVIADATPERIIDIDAEIPVGYTFKVIIKPQSSGNQGSVRGWVEYEIIE*
Ga0116200_100185105F028993GAGGMADIVEKAVKKRSERIAVSEAYYKEGVESPTKDWLEQFKKAKDRRNAGLRRAMEEGLFEIGAERVGTEGWKEATLAKADRWLTGATSEVANRRYEERMRDVAECIERARKAVEGMPTTTIEQRAEKSKRFQIEMAKCMEEKKRRR*
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Institute for Fundamental Biomedical Research
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