Basic Information | |
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Taxon OID | 3300010332 Open in IMG/M |
Scaffold ID | Ga0116200_10018888 Open in IMG/M |
Source Dataset Name | Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3439 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Mexico: Guaymas Basin, Gulf of California | |||||||
Coordinates | Lat. (o) | 27.0078 | Long. (o) | -111.4071 | Alt. (m) | Depth (m) | 2000 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009582 | Metagenome | 315 | Y |
F028993 | Metagenome | 189 | N |
Protein ID | Family | RBS | Sequence |
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Ga0116200_100188881 | F028993 | AGGTGG | MEMVDIVEKAVKKRSERIAVSEAYYKEGVEHPAKDWLDEFKKAKERRNAGLRRAMELGLFEIGAERVGTDGWQKATLAKADRWLSGATSAEANEKYETAMRDVAECIERARKAVEGMPTTTLEQRAEKSKRFQIEMAKCMEEKRKRR* |
Ga0116200_100188884 | F009582 | GAG | MTIRRERRKFIGGTGRAVKEARVDVILQRVNEKIGGELDVSPSHIYRYGVNNIFQRSFAYLLGWKTNGEPQKVAVTEGGLLKVGIAGAGFEEIDVLKGTATVDWSSVMEFSFVPNRIRFESLDYPYVAKFSRDNVRWSEEIYVDEGTPRDYDICAKYVKVRRFGGTDAQYWIVGMR* |
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