NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136644_10000351

Scaffold Ga0136644_10000351


Overview

Basic Information
Taxon OID3300010334 Open in IMG/M
Scaffold IDGa0136644_10000351 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36843
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (68.97%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F002149Metagenome / Metatranscriptome589Y
F003112Metagenome / Metatranscriptome506N
F068578Metagenome / Metatranscriptome124N
F083891Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0136644_1000035127F003112N/ALLTEKDYACFKEALKCAEDNNRIASGTKYIGAVKHLLSVNRSIKRMVDDGRDRDEVVGAVVHLAVSLKYLESRNE*
Ga0136644_1000035133F000635GAGGMTLTEIAQYAGEKVGKTDSDTLTFLQKSASLNYRRVWNFAPWRESITNSTYSVSTSTRTVTLGSLVENPLSVAYGDSELLSVDLQTIVSQDADLLDSDRTGTPTQYYFKGRNTSGTAEIDLYPLLNTSSTTTLKVIEKVSCVTRQNNVVEFPPSSSALTDELRLPHVQHVVLALTHADALERERQYAKAQAVVSTANADLAQMAQYEMSQVGGIKVITPSSLGEYSITDIGV*
Ga0136644_1000035135F002149AGAAGGMTAIEYIEASGVPEGMWHNLADWFSWFEKQGMVGIVEDSNGIAGVALARCLKEDQKPDHYVHSEDGDNVFVDLTISSKGAMSLRCLLLLLWERFGIRKRITFNRSGRYRSYDYMNFMKKARV*
Ga0136644_1000035148F068578GGAMESIMEAIDSLGTAVRELQEGTTTTDKGPRIDDVVTITADVIRRIMYRGSNKSGFGDWFHKNSLRYNSDRAIAHMTRAMQQIDGNVSSPDDSGETCIDHLERALVRAVFTLYKAKEGKIR
Ga0136644_100003519F083891GGAGMSQSIECPNCKVAVPVALFASRIGKVTSEAKARASIANGKKGGAPKGNRNWAGKELPVASFRPIKLD*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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