Scaffold Ga0136644

Basic Information
Taxon OID	3300010334 Open in IMG/M
Scaffold ID	Ga0136644_10000539 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010334 Open in IMG/M

Scaffold ID

Ga0136644_10000539 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30213
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (73.68%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

30213

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (73.68%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070923	Metagenome	122	Y
F078637	Metagenome	116	Y
F090310	Metagenome	108	Y
F098561	Metagenome	103	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136644_1000053918	F098561	AGGA	MAITLGKDCRISIGGNVSGARNVTLTETARTIDINPFGSREASVYQTGYDCSVSVELNDSEALGDAFSNMHTGTPVQVSGGAGGFNFLAVITGISENDPIDGVATFTIDAKMTDRSLTRGGA*
Ga0136644_100005392	F102439	N/A	MSEVQRSFVDDDLPPAKGKRRRMPERLSPPMRKFLTKLARIGARVTWTIELIYDPSKGGQGELTDRAKAGDHTLVLDTVREVEYRASQLGDDIEAFMTPPDKLPAEPGHPSRVDAMARRQAARQHLFD*
Ga0136644_1000053922	F090310	AGGA	MSNTLRTIADRLATGLNSVTWAIPSTVVQRRNWTDLDVESMTSPRVFVVPGNADVTRISRQMMQIDYTVTVFVGRHVQTDSDVDAMLDLADSVMLQVRAHSFGQAVVWPAGVTSPQTVSIDLNPDDALTERNVWRAVITATYRVFESNVLPTA*
Ga0136644_100005393	F070923	GGCGG	VTVGDAPGGMLPHLRSRLRQEIGPRAVNAGRAFDEFVDAICRCWNAEHWTKLARTQPESQSAAIQDAKVLIAKVREDVEAMWGDSEQLRSLYSSVGEHTVAVFARLWFESMSNRTWMRQACREARRT*
Ga0136644_1000053934	F078637	N/A	MKTEWITVEFLGGPLDGALRPVQVGVAIYYLANGAVIHAYAADEIHEGNSVRPVMSHNEVLNVSNWNA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136644_10000539

Overview

Ecosystem & Geography

Associated Families

Sequences