NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134063_10001541

Scaffold Ga0134063_10001541


Overview

Basic Information
Taxon OID3300010335 Open in IMG/M
Scaffold IDGa0134063_10001541 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8178
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013074Metagenome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0134063_100015413F013074GGAMVLTLEIIATIIFVTIFRLVWILRRPVHKDITFYILPGLSNLRKIVRYDPGFSYVPYGLIWYAINVPIVRAVRYSGRLWITVLALIDIAFLWYSQVLGLTFFIAYAFMGTFQLLRAPWNASINWLIVLAPVSWLFLVLAPMAKFPIGLPIQVLRYTQRAVGHQHNYIYFGLLVTFWLIVFNHLYFVPGLDTLAVLGFGTIWGVILGYAFVERKHSQD*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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