Basic Information | |
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Taxon OID | 3300010335 Open in IMG/M |
Scaffold ID | Ga0134063_10003997 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5359 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Angelo Coastal Reserve, California | |||||||
Coordinates | Lat. (o) | 39.7181 | Long. (o) | -123.6527 | Alt. (m) | Depth (m) | .2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003152 | Metagenome / Metatranscriptome | 504 | Y |
F009676 | Metagenome / Metatranscriptome | 314 | N |
Protein ID | Family | RBS | Sequence |
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Ga0134063_100039975 | F003152 | AGTAGG | MGSAESSHGSTDKEFVEFDHWLYGAVLGTGYTQKAVSKGLDAGLYDQYLRGHYTPIRAATAQSYEDPIDLQMIHPVRGNREILLSRITRGPPDEAGRPTFANHTVVGRIEPLRSGAITLESIYQALGEFDRRNVDVAGEMSLLRVPVRSEAQRQLPFGTGIHRHLTFPAVETLATRIMADPTSRTLLLCRNTTPEARNATLNLVFELLCWGCGLPILTAISETPRSSAMNFFNLVVAPRGVRADSSWAILESALAEPVLPRVMDRDDVYQKLTATVRQSPDLAAAR* |
Ga0134063_100039976 | F009676 | AGG | MPCALLGDRASGKTTFLGLLYAAQVKYGTGVQDDFRFHAPMGSLSLMSAVYEGMKDARFPSATLKEEITELGFIFGYLRKVVGKLPYYVRQQNWVRPFSTLRFSAYDVSGEDIEEFIETGIASRPLIQQLLKSVVVVVLVDCSKMTTEIDTPAYKKMLRYDSTVAKLLVAFQTYKRQEYDRLKDSGVKADAPRIYPAFVLSKFDTLRDDVLARLGLHRGFPENKRARKDYAEALLRVFVPQTLSQIRGGKIAGVSMDKAAYFLSWVRTEQHEGMEPVGQPRIVRTGFAPEGGGEPDFSYDEYVEFIEHFRDIAHKIPDEVLEAERFQAQALARPA* |
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