NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074046_10000046

Scaffold Ga0074046_10000046


Overview

Basic Information
Taxon OID3300010339 Open in IMG/M
Scaffold IDGa0074046_10000046 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)101140
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (52.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003876Metagenome / Metatranscriptome464Y
F011360Metagenome / Metatranscriptome291Y
F037878Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0074046_1000004644F037878GGTGGMWSSFDDYGVLVMHLAPWDEKLAVQEGALHVCGEGCAQKLQSQFMGNVIENRARRNSG*
Ga0074046_100000467F003876GAGGMMTNKIEKAGISFGINRQSGPIVIEVRPHHDTISALRGVQLGFELLNGIGAEQARKILDVLNENVIGVVVTPVSEAKTEAASG*
Ga0074046_1000004678F011360AGGGGGMATYGNWIEKSTRNGALLGGVVGFFYAAYIMAATLAIDWTDLLRTIASVGAVLVFAVILGSLCIAIGGLAGLVLGVVASPLRALTRKG*
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