NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074046_10000856

Scaffold Ga0074046_10000856


Overview

Basic Information
Taxon OID3300010339 Open in IMG/M
Scaffold IDGa0074046_10000856 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28051
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003832Metagenome / Metatranscriptome466Y
F005268Metagenome / Metatranscriptome406Y
F014888Metagenome / Metatranscriptome259Y
F025325Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0074046_100008563F025325GAGGMTSDAPKQVKKPWEELIAAASMETDPEKLGPMMEEIFAALEERERLLSRSQNPTGS*
Ga0074046_100008564F005268N/AMFEAMNRPDKETAEQETWRVLSEAGLVEIRLDEFAERIRDVKRIVGARLHELLDFNTAIKERESAAYSLGTLKRLELKVLANTPKAPDPSEI*
Ga0074046_100008565F003832N/AMKSTAEQLRTEANWPPAEGRLIAFKSSTGSETAVLKEARWGLVWRDFILEDGRVIPEHRISGSPQPQAWRKIDEVTDHEREECEERLLSMAGSGMDPRQRDQTFWAELNQYLAYTYLRFKHAERNSDTEQ*
Ga0074046_100008567F014888AGGAGMNKVLETLLTVVALAGLYSAISTSAPPPGHSAIRADQTVLMADGTDPMPLCRKIVCTP*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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