NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074045_10000352

Scaffold Ga0074045_10000352


Overview

Basic Information
Taxon OID3300010341 Open in IMG/M
Scaffold IDGa0074045_10000352 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45099
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (51.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006028Metagenome / Metatranscriptome383Y
F007930Metagenome / Metatranscriptome342Y
F069189Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0074045_1000035216F069189GGAMCGAHRLRLRWEMPEYNFQLRGWHAVIAIVALIGYGGIQIWMRVRTVEDGMRDAVRERLLNEYSGRGPRDVARLLAEARNGTPVDPLPEQVQRDVEFTSMAAHGRMGGPATFVRVEVTVDGAPPPDGRAIRYFRVSRKFEGGGWMVVGESDSYFYYRELFP*
Ga0074045_1000035229F006028GGAGGMSEPDVLDRILQTCSYRFRNVVCPNKDRIASITAAKFHGEDTDWSVVECSLLPNGEVKCAMSCLLRDFEKNE*
Ga0074045_1000035230F007930GGAGGMFDPKITDPHPESAKTYPQKVFCQQRQCEARVVVANWPHSEEGWSDWRVIDCSLLPPGAVHCGMDCLSQARLNQS*
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