NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074045_10003272

Scaffold Ga0074045_10003272


Overview

Basic Information
Taxon OID3300010341 Open in IMG/M
Scaffold IDGa0074045_10003272 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14603
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F004823Metagenome / Metatranscriptome422Y
F010114Metagenome / Metatranscriptome308Y
F017965Metagenome / Metatranscriptome237Y
F032049Metagenome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0074045_1000327215F032049AGGAMFHMMKHEPVMFGAVLLMMAMAVAQSQPDSETLSVQGYQGQASVIRYQGRVFVDAQALAQITNGSLSFEKNRIILTLPSSDGASSSGDAHTSGFSRPFIRAAIEAMASIREWGGTLQAVVQNGYPVGNTTAGNTIMAFQGRAADSVALAAAAASTDSDYRGLDLLKNEFNNVQTWADGYVKARGSLSAAELSMSESQLNNDSEAQKIIHCGQFLAQMFASGNFQDDAACR*
Ga0074045_100032722F004823AGGAGMYATKVINGVPAIQRDGQSVLGVCDQNWDFANWLCALLNELGHKSELLLNEQEWEWLNSHDRAFRRTAQHA*
Ga0074045_100032725F017965N/AMEKEHDSIMVPAESVCSNRIALTDMSEKIGHRDPLYLFACHLEWRIKRNLAAYEELLAALDDQDDDIRCLAESLLHRSSPRPERTATVSNPGEVAE*
Ga0074045_100032726F001596AGGAGMAQVHSIAEAVDARNYASPAEIVACFQDQRNILGRLAFLITGDQATAEQAVIQACEMTLRGNSPFRNWLFEWAKAATIASAISRGTEAIRACEAAYKDRQCPHLEHQSQGDADERVASLDLILATDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVVGANCHVMTWLHNGHVGPSQFIARIL*
Ga0074045_100032727F010114GAGGMIIELNDDETRLLYNVLLEQAQEHSSYTSTSEVAERLCELATRFGRPVRELPNITIA*
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