NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116252_10281043

Scaffold Ga0116252_10281043


Overview

Basic Information
Taxon OID3300010342 Open in IMG/M
Scaffold IDGa0116252_10281043 Open in IMG/M
Source Dataset NameAD_JPNAca1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)994
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium ADurb.Bin331(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)37.43Long. (o)138.83Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055725Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0116252_102810431F055725N/AMAYFNGCGIDLETITELAAQGLSLNSMSKVTGHSKNGIKAALELNNIPYTMGIRERFVTVDGVLMSLGDACNAQGFSREAMYAWRVKRGLNEQEGFEAYIVYQQSKRTIDKPILTFKNATVIYKKERYTLADISDKLKLNKQRFEVFMRQNRYAQNEFERYCYMRGL*

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