Basic Information | |
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Taxon OID | 3300010343 Open in IMG/M |
Scaffold ID | Ga0074044_10027109 Open in IMG/M |
Source Dataset Name | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4072 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003832 | Metagenome / Metatranscriptome | 466 | Y |
F005268 | Metagenome / Metatranscriptome | 406 | Y |
F025325 | Metagenome / Metatranscriptome | 202 | Y |
F058360 | Metagenome / Metatranscriptome | 135 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0074044_100271095 | F025325 | AGGAG | MLSDDPKKRVENNWEELVAAASMETDPEKLATMLEEIFAALEERERTLTLRQNPSGS* |
Ga0074044_100271097 | F005268 | GAGG | VSRSDNEPDELQVWRVLSEAGLVEIRLDEFAERIRDVKRIVTGRLRDLMDFNNRVQERESAAYSLGTLKGLELKVLANAPKPPDPPKI* |
Ga0074044_100271098 | F003832 | N/A | MMMSTAKQLHTAARWPPEEGQIISLKSSTASETAILKEVRWGLVWRDFILEDGRVIPEHRISGCPQPQAWRKISEVTDQEREECEERLLSMAGAGMDPRKRDQSFWAELNQYLAYTYLRFKPAAFKVQDNDKGKE* |
Ga0074044_100271099 | F058360 | N/A | LILVSFVMWYGDGQAAIISLLKGTTYNAVTLVWIGYLKQQPQLVPKIEAATNTNTLGLALSTVPAVSDPDASFMLRVEQAVDRVLSRSDWPRPAAQGSRIVSRKPNPEESN* |
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