NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074044_10056781

Scaffold Ga0074044_10056781


Overview

Basic Information
Taxon OID3300010343 Open in IMG/M
Scaffold IDGa0074044_10056781 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2672
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004823Metagenome / Metatranscriptome422Y
F006278Metagenome / Metatranscriptome377Y
F017965Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0074044_100567812F004823AGGAGMYGTKAINGVPAIQRDGRSVLSVCDQNWEFADWLCALLNELGHKSELLLNEQDCEWLNANDRAFRRAVQHA*
Ga0074044_100567814F017965AGGAMTEKIGHHDALYLFACHLEWLAKRNLAAYQELLAALDDHDAEIRRLAEYLLHRSSPRPEQTSARIESW*
Ga0074044_100567815F006278GAGGMFRAEIQWLVSGPTLKLEGKLVADWAEQAGCLVTKDVLPRGLIVDLTEVSYIDSVGEQLLKWLASVGALFVAGNVYAIAVCDRLRLPPMQRIAERRKRRHGNNEERSSI*
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