Scaffold Ga0116239

Basic Information
Taxon OID	3300010346 Open in IMG/M
Scaffold ID	Ga0116239_10012149 Open in IMG/M
Source Dataset Name	AD_USMOca
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010346 Open in IMG/M

Scaffold ID

Ga0116239_10012149 Open in IMG/M

Source Dataset Name

AD_USMOca

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11600
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

11600

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (83.33%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Ecosystem

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	41.53	Long. (^o)	-90.43	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA

Coordinates

Lat. (^o)

41.53

Long. (^o)

-90.43

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F094051	Metagenome / Metatranscriptome	106	N
F103497	Metagenome / Metatranscriptome	101	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0116239_1001214912	F094051	N/A	VGDIKMTDIGVLGKVQIEGTWTQKRLILPVIQAALERTPLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVAGGGLPSGFDIEVLKDRVILYVSDEAEIESDVGDPMSLQQNAAAGALTANLNKLIAEKLNTTPQVYGSGGNLGNWSSSKPTLAIGKMAAKMGVHRPTAIVMGTLAGAYYADAVGDKVALANLSEWRGAVSIHPILNIPVFISTDIDNLDDTSGNRYVFASCNTTPGVVTVFSKIKAREYDVPELGARAYQYDIWRSPFSNIQQTSSKNLGVMWGYMTES*
Ga0116239_1001214917	F103497	AGGA	MAEPESRVMRGTKAEGEVSFQSSRNAYTAPAITPESARNYFEQNIHLATQIINLIPQVFPGAPDIYVEDRDLERVDDLSKWVARVAENVGIYPSMKISWIDTMSHGCSVKSAGYTYRGGRYEITEIRDLPAITFRLPPRLPGILFQAPANPLMPGIVWDAEQKRVRVFQTLDDALTVQEIKNFSIIRDPSTPFPSGRAYCLPAYHVISAIDHANLAADQQVHRVGAPLIFPQITETITEDLRAWGDNFVRKWGKDTGFVIPPGVAFPDVKIRESTTAADRLKMLVAWLEYYFNPTTVLKTGSGTTIGASDSGAMRVWNNFIGGTQAWIEEQYETFLQPLLTANGYDDLNVRIQLTRPELDRSTAIVDQIRVGIEGKALTREDIRRNLSELILGELTDEIRAELDATYAAAPQMVFENLAGFSRKEEASISAAERKIEAANLASLRAIEKILEKST*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0116239_10012149

Overview

Ecosystem & Geography

Associated Families

Sequences